python main.py Fig.4B_dCas9-8eCH-AGAA-2_S37_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eCH-AGAA-2_S37_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eCH-AGAA-3_S61_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eCH-AGAA-3_S61_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eG-AGAA-1_S7_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eG-AGAA-1_S7_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eG-AGAA-2_S43_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eG-AGAA-2_S43_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eG-AGAA-3_S67_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eG-AGAA-3_S67_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8enCas9G-AGAA-1_S3_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8enCas9G-AGAA-1_S3_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8enCas9G-AGAA-2_S39_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8enCas9G-AGAA-2_S39_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8enCas9G-AGAA-3_S63_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8enCas9G-AGAA-3_S63_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRH-AAGA-1_S25_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRH-AAGA-1_S25_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRH-AAGA-2_S31_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRH-AAGA-2_S31_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRH-AAGA-3_S85_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRH-AAGA-3_S85_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-AAGA-1_S21_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-AAGA-1_S21_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-AAGA-2_S57_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-AAGA-2_S57_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-AAGA-3_S81_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-AAGA-3_S81_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-AGAA-1_S5_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-AGAA-1_S5_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-AGAA-2_S41_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-AGAA-2_S41_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-AGAA-3_S65_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-AGAA-3_S65_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-GAAG-1_S17_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-GAAG-1_S17_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-GAAG-2_S53_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-GAAG-2_S53_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-8eRY-GAAG-3_S77_L001_R1_001.fastq.gz out/Fig.4B_dCas9-8eRY-GAAG-3_S77_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710CH-AGAA-1_S9_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710CH-AGAA-1_S9_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710CH-AGAA-2_S45_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710CH-AGAA-2_S45_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710CH-AGAA-3_S69_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710CH-AGAA-3_S69_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710G-AGAA-1_S15_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710G-AGAA-1_S15_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710G-AGAA-2_S51_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710G-AGAA-2_S51_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710G-AGAA-3_S75_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710G-AGAA-3_S75_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710nCas9G-AGAA-1_S11_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710nCas9G-AGAA-1_S11_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710nCas9G-AGAA-2_S47_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710nCas9G-AGAA-2_S47_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710nCas9G-AGAA-3_S71_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710nCas9G-AGAA-3_S71_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RH-AAGA-1_S27_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RH-AAGA-1_S27_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RH-AAGA-2_S33_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RH-AAGA-2_S33_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RH-AAGA-3_S87_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RH-AAGA-3_S87_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-AAGA-1_S23_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-AAGA-1_S23_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-AAGA-2_S59_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-AAGA-2_S59_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-AAGA-3_S83_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-AAGA-3_S83_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-AGAA-1_S13_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-AGAA-1_S13_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-AGAA-2_S49_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-AGAA-2_S49_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-AGAA-3_S73_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-AGAA-3_S73_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-GAAG-1_S19_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-GAAG-1_S19_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-GAAG-2_S55_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-GAAG-2_S55_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_dCas9-710RY-GAAG-3_S79_L001_R1_001.fastq.gz out/Fig.4B_dCas9-710RY-GAAG-3_S79_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_FXnCas9-7-10nCas9nCas9G-AGAA-rep1_S94_L001_R1_001.fastq.gz out/Fig.4B_FXnCas9-7-10nCas9nCas9G-AGAA-rep1_S94_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_FXnCas9-7-10nCas9nCas9G-AGAA-rep2_S190_L001_R1_001.fastq.gz out/Fig.4B_FXnCas9-7-10nCas9nCas9G-AGAA-rep2_S190_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_FXnCas9-7-10nCas9nCas9G-AGAA-rep3_S286_L001_R1_001.fastq.gz out/Fig.4B_FXnCas9-7-10nCas9nCas9G-AGAA-rep3_S286_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_FXnCas9-7-10nCas9RH-AAGA-rep1_S95_L001_R1_001.fastq.gz out/Fig.4B_FXnCas9-7-10nCas9RH-AAGA-rep1_S95_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_FXnCas9-7-10nCas9RH-AAGA-rep2_S191_L001_R1_001.fastq.gz out/Fig.4B_FXnCas9-7-10nCas9RH-AAGA-rep2_S191_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_FXnCas9-7-10nCas9RH-AAGA-rep3_S287_L001_R1_001.fastq.gz out/Fig.4B_FXnCas9-7-10nCas9RH-AAGA-rep3_S287_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eCH-AGAA-1_S2_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eCH-AGAA-1_S2_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eCH-AGAA-2_S38_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eCH-AGAA-2_S38_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eCH-AGAA-3_S62_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eCH-AGAA-3_S62_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eG-AGAA-1_S8_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eG-AGAA-1_S8_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eG-AGAA-2_S44_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eG-AGAA-2_S44_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eG-AGAA-3_S68_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eG-AGAA-3_S68_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8enCas9G-AGAA-1_S4_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8enCas9G-AGAA-1_S4_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8enCas9G-AGAA-2_S40_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8enCas9G-AGAA-2_S40_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8enCas9G-AGAA-3_S64_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8enCas9G-AGAA-3_S64_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRH-AAGA-1_S26_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRH-AAGA-1_S26_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRH-AAGA-2_S32_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRH-AAGA-2_S32_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRH-AAGA-3_S86_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRH-AAGA-3_S86_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-AAGA-1_S22_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-AAGA-1_S22_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-AAGA-2_S58_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-AAGA-2_S58_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-AAGA-3_S82_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-AAGA-3_S82_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-AGAA-1_S6_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-AGAA-1_S6_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-AGAA-2_S42_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-AGAA-2_S42_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-AGAA-3_S66_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-AGAA-3_S66_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-GAAG-1_S18_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-GAAG-1_S18_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-GAAG-2_S54_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-GAAG-2_S54_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-8eRY-GAAG-3_S78_L001_R1_001.fastq.gz out/Fig.4B_nCas9-8eRY-GAAG-3_S78_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710CH-AGAA-1_S10_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710CH-AGAA-1_S10_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710CH-AGAA-2_S46_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710CH-AGAA-2_S46_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710CH-AGAA-3_S70_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710CH-AGAA-3_S70_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710G-AGAA-1_S16_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710G-AGAA-1_S16_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710G-AGAA-2_S52_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710G-AGAA-2_S52_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710G-AGAA-3_S76_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710G-AGAA-3_S76_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-AAGA-1_S24_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-AAGA-1_S24_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-AAGA-2_S60_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-AAGA-2_S60_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-AAGA-3_S84_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-AAGA-3_S84_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-AGAA-1_S14_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-AGAA-1_S14_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-AGAA-2_S50_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-AGAA-2_S50_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-AGAA-3_S74_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-AGAA-3_S74_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-GAAG-1_S20_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-GAAG-1_S20_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-GAAG-2_S56_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-GAAG-2_S56_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
python main.py Fig.4B_nCas9-710RY-GAAG-3_S80_L001_R1_001.fastq.gz out/Fig.4B_nCas9-710RY-GAAG-3_S80_L001_R1_001 -a ACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGAGGCTGCGGCAGGAGAATCGCTTGAGCCCGGGAGGCAGAGGTTGCATTAAGCCAAGATCGCCCAATG -rc --no_trim
